The only thing that would eliminate hood scoops from a Pro Stocker would be a rule that prohibited them. Intake manifold design determines where the air enters the engine. With as much R&D (translated as $) as there has been dumped into the current designs don't expect them to change just beause the engine builders can introduce the fuel in a different location. Over the long term you might see some differences but don't expect sweeping changes when, and IF, NHRA ever decides to go to EFI.
There are already an abundance of companies producing EFI control modules (not "computers" as you nostalgia guys refer to them...hehehe) for the drag racing industry. To name a few...
F.A.S.T.
Big Stuff
Electromotive (not to be confused with Electromotion)
M.F.I.
HalTech
Holley
There is already a wealth of knowledge in the industry surrounding electronic fuel and ignition management. Surprisingly, though, there is a huge misconception about the similarities between EFI on our daily drivers and EFI on a race car. Contrary to belief, an EFI system on a race car-especially on a naturally aspirated engine-does little or no "live" or "active" adjustment during a run. Turbocharged or supercharged systems will perform active fuel and ignition adjustments based on boost/load levels, though. Our dialy drivers are constantly adjusting the AFR and ignition timing (and more modern engines will control cam timing) to satisfy economy and emissions. Like most mechanical or electronic management systems on a drag racing vehicle, EFI is-for the most part-set it and hope for the best. Any adjustment during a 1/8 mile or 1/4 mile pass will usually result in a slower E.T. even though it could very easily save a wasted run. While the control modules can make decisions in microseconds the effect of change is not as fast especially when you are dealing with a race car that is constantly accelerating and requiring such a high traction coefficient.
The ignition systems that are currently available are to be more feared than any fuel delivery system. Racers and the manufacturers have just started to scratch the surface on controlling wheel speed/spin, RPM slew rate, and adaptive strategy with respect to ignition control...